Atlas¶
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class
nidmd.Atlas(nroi: int)[source] Representation of a Cortical Parcellation Atlas.
Constructor¶
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Atlas.__init__(nroi: int)[source]¶ Atlas Constructor.
- Parameters
nroi (int) – Number of ROI.
- Yields
size (int) – Number of ROI
name ({‘glasser’, ‘schaefer’}) – Name of cortical parcellation atlas. Supported are Glasser and Schaefer atlasses.
coords_2d (pd.DataFrame) – Pandas DataFrame containing 2D coordinates of cortical surface plotting
networks (Dictionary-like) – Object containing indices relevant to each network.
Methods¶
Returns 3D surface coordinates. |
API reference¶
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class
nidmd.Atlas(nroi: int)[source]¶ Representation of a Cortical Parcellation Atlas.
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static
surface()[source]¶ Returns 3D surface coordinates.
- Returns
fsaverage (Dictionary-like) – (from the Nilearn documentation) The interest attributes are : - ‘pial_left’: Gifti file, left hemisphere pial surface mesh - ‘pial_right’: Gifti file, right hemisphere pial surface mesh - ‘infl_left’: Gifti file, left hemisphere inflated pial surface mesh - ‘infl_right’: Gifti file, right hemisphere inflated pial surface mesh - ‘sulc_left’: Gifti file, left hemisphere sulcal depth data - ‘sulc_right’: Gifti file, right hemisphere sulcal depth data
surf (Dictionary-like) – Object containing the x, y, z coordinates as well as the i, j, k triangulation coordinates
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static